DNA Replication: Helicase and Polymerase
The steps of semi-conservative DNA replication: helicase unwinding and breaking hydrogen bonds, base pairing of free nucleotides, and DNA polymerase joining them. Includes the 5-mark exam question, a worked model answer and the examiner trap on saying helicase breaks hydrogen bonds, not just unzips.
Chapters (9)
Exam question [5 marks]
Describe how DNA is replicated in a cell.
Try it on paper first, then check the mark scheme below. The question is original and was written for this lesson.
Mark scheme
| Mark | Mark point | Also accept | Do not accept |
|---|---|---|---|
| 1 | DNA helicase unwinds the double helix and breaks the hydrogen bonds between complementary bases | "helicase breaks hydrogen bonds between the two strands", "helix unwinds and the strands separate" | "DNA unzips" with no enzyme or bond; "helicase breaks covalent bonds / the backbone"; "polymerase unwinds" |
| 2 | Both (original) strands act as templates | "each strand is a template", "two template strands" | "the DNA is the template" with no reference to both strands |
| 3 | Free (new) nucleotides are attracted to the exposed bases on the template strand and join by complementary base pairing (A with T, C with G) | "bases line up opposite their complementary partner", "hydrogen bonds form between new and template bases" | "A with G" or "C with T"; "nucleotides are joined to the template by phosphodiester bonds" |
| 4 | DNA polymerase joins adjacent nucleotides (on the new strand) in a condensation reaction / forming phosphodiester bonds | "polymerase forms the sugar-phosphate backbone", "polymerase joins the nucleotides together" | "polymerase joins the bases to the template"; "polymerase joins the two strands together" |
| 5 | Each new DNA molecule contains one original strand and one new strand (semi-conservative) | "half old, half new", "one conserved strand" | "the old molecule stays whole and a new molecule is made" (that is conservative) |
This is a sequence question, so organise the answer in order: unwind, template, base pairing, joining, result. Mark 1 needs helicase plus either unwinding or breaking hydrogen bonds; "helicase unwinds" alone is enough only with the enzyme named. "Polymerase builds the new strand" alone is too vague for mark 4. Name the enzyme and the bond each time; "unzips" and "copies itself" score nothing. The hydrogen bonds link new bases to the template; phosphodiester bonds link nucleotides within the new strand. Credit is not given for the experiments that tested the model (next lesson).
Model answer (5/5)
DNA helicase unwinds the double helix and breaks the hydrogen bonds between the complementary bases, so the two strands separate. Both strands act as templates. Free nucleotides are attracted to the exposed bases on each template strand and line up by complementary base pairing, with A pairing with T and C pairing with G. DNA polymerase then joins the adjacent nucleotides together in a condensation reaction, forming the sugar-phosphate backbone of each new strand. Each new DNA molecule therefore contains one original strand and one new strand, so replication is semi-conservative.
Examiner trap
- Saying helicase 'unzips' without saying it breaks hydrogen bonds
- Saying DNA polymerase joins bases to the template (it joins adjacent nucleotides by phosphodiester bonds)
- Saying the new strand is joined by hydrogen bonds to its own strand
- Forgetting both strands act as templates
Key terms
- semi-conservative replication
- DNA helicase
- DNA polymerase
- template strand
- complementary base pairing
- hydrogen bonds
- condensation reaction
- genetic continuity
Lesson notes
A written version of the video, chapter by chapter, for revision. Times link to the video.
0:29Why copy DNA?
First, why copy DNA at all? Before a cell divides, it must give each daughter cell a full set of genes. Copying the DNA exactly means the genes pass on unchanged from one generation of cells to the next. That is called genetic continuity. A mistake in copying could change a gene, so the process has to be accurate.
The method is called semi-conservative replication. Half of each new molecule is kept from the old one. Hold that thought.
1:02Helicase unwinds the helix
Step one. The double helix has to open up. The enzyme DNA helicase unwinds the helix. As it moves along, it breaks the hydrogen bonds between the complementary base pairs. Now you have two separate strands, with their bases exposed.
Each hydrogen bond is weak on its own, so the enzyme can open the helix without damaging the strands. You will often hear this called unzipping. In the exam, use the proper words: unwinding, and breaking hydrogen bonds. Notice, helicase breaks hydrogen bonds. It does not break the backbone. The sugar-phosphate backbones stay intact.
1:43Each strand is a template
Each of these old strands now acts as a template. A template is a pattern. The order of bases on the old strand decides the order of bases on the new one. And this is a favourite mark: both strands are used as templates, not just one.
2:00Free nucleotides pair up
Step two. Free nucleotides are available, ready to be used. They are attracted to the exposed bases on the template strand. Each one lines up by complementary base pairing. A pairs with T, and C pairs with G. Hydrogen bonds form between each new base and the template base opposite it.
Try one. If the template reads A, T, G, C, the new strand must read T, A, C, G. Always check your pairs. A with G, or C with T, is the classic slip. Because the pairing is so specific, the new strand has exactly the right base sequence.
2:40DNA polymerase joins them
Step three. The new nucleotides are lined up, but they are not joined to each other yet. DNA polymerase does that job. It catalyses a condensation reaction between adjacent nucleotides on the new strand, forming a phosphodiester bond. Remember condensation from earlier lessons. Two molecules join, and a molecule of water is released.
That builds the sugar-phosphate backbone of the new strand. So remember the two kinds of bond. Hydrogen bonds hold the new base to the template. Phosphodiester bonds join the nucleotides within the new strand.
3:19Two identical molecules
Both templates are copied at the same time. The result is two DNA molecules. Each one contains one original strand and one newly made strand. That is why it is called semi-conservative. Half of each molecule is conserved from the parent.
So the original molecule is not kept whole, and it is not thrown away. Its strands are shared out, one to each new molecule. And because of base pairing, both copies have the same base sequence as the original.
4:28Examiner trap and recap
The traps. Saying helicase unzips the DNA is not enough. Say that it breaks hydrogen bonds. And do not say that DNA polymerase joins the new bases to the template. It joins adjacent nucleotides to each other, in the new strand.
Recap. Helicase unwinds and breaks hydrogen bonds. Bases pair up on both templates. Polymerase joins nucleotides. Each copy keeps one old strand.
Next lesson: how did scientists actually prove that it works this way?
Watch first
This lesson builds on:
- DNA Double Helix and Phosphodiester Bonds · AQA 7402 · 3.1.5.1
Keep going
More from 3.1 Biological molecules
- DNA and RNA Nucleotides: Structure Compared · AQA 7402 · 3.1.5.1
- DNA Double Helix and Phosphodiester Bonds · AQA 7402 · 3.1.5.1
- Meselson and Stahl Experiment Explained · AQA 7402 · 3.1.5.2
- Condensation and Hydrolysis Reactions · AQA 7402 · 3.1.1
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Independent revision resource, not affiliated with or endorsed by AQA. The exam question is original and was written for this lesson; it is not an AQA question. Spotted an error? Email info@medservatory.com with the lesson code AB-017.